miRBase entry: pny-mir-15b

Stem-loop pny-mir-15b

Accession

MI0034979

Description

Pundamilia nyererei pny-mir-15b precursor miRNA

Sequence

UAGCAGCGCAUCAUGGUUUGAaacaauguggaaaaggugcgaaccauaauuugcugcuuua
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))...

Structure

--U       C  C        Aa  aa gu 
   AGCAGCG AU AUGGUUUG  ac  u  g
   ||||||| || ||||||||  ||  |   
   ucgucgu ua uaccaagc  ug  a  g
auu       u  a        -g  ga aa

Annotation confidence Not enough data

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Genome context

JH419322.1: 1132042-1132102 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-15b

Accession	MIMAT0042975
Description	Pundamilia nyererei pny-miR-15b mature miRNA
Sequence	1 - UAGCAGCGCAUCAUGGUUUGA - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381