miRBase entry: pny-mir-18b

Stem-loop pny-mir-18b

Accession

MI0034981

Description

Pundamilia nyererei pny-mir-18b precursor miRNA

Sequence

UAAGGUGCAUCUAGUGUAGUUGgugaaguauucaaagucuacugcccuaguugccccuucuguc
.((((.(((.((((.(((((.((((((...))))...)).))))).)))).))).)))).....

Structure

----U    U   U    U     U  ---    g 
     AAGG GCA CUAG GUAGU Gg   ugaa  
     |||| ||| |||| ||||| ||   |||| u
     uucc cgu gauc cguca cu   acuu  
cuguc    c   u    c     u  gaa    a

Annotation confidence Not enough data

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Genome context

JH419206.1: 4459387-4459450 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-18b

Accession	MIMAT0042977
Description	Pundamilia nyererei pny-miR-18b mature miRNA
Sequence	1 - UAAGGUGCAUCUAGUGUAGUUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381