miRBase entry: pny-mir-216a

Stem-loop pny-mir-216a

Accession

MI0034986

Description

Pundamilia nyererei pny-mir-216a precursor miRNA

Sequence

AAAUCUCAGCUGGCAACUGUGAgucguucacuagcugcucucacaauggccucugggauuaug
.((((((((..(((...((((((..((.........)).))))))...))).))))))))...

Structure

--A        CU   AAC      uc  uca 
   AAUCUCAG  GGC   UGUGAg  gu   c
   ||||||||  |||   ||||||  ||   u
   uuaggguc  ccg   acacuc  cg   a
gua        -u   gua      -u  ucg

Annotation confidence Not enough data

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Genome context

JH419354.1: 1380204-1380266 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-216a

Accession	MIMAT0042982
Description	Pundamilia nyererei pny-miR-216a mature miRNA
Sequence	1 - AAAUCUCAGCUGGCAACUGUGA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381