miRBase entry: pny-mir-125c

Stem-loop pny-mir-125c

Accession

MI0035012

Description

Pundamilia nyererei pny-mir-125c precursor miRNA

Sequence

ucccugagacccuaacuugugacguugugcuuucauguccACGGGUUAGGCUCUCGGGAGCU
..(((((((.(((((((((((((((.(......))))).))))))))))).)))))))....

Structure

--uc       c           -    u ug 
    ccugaga ccuaacuugug acgu g  c
    ||||||| ||||||||||| |||| |   
    GGGCUCU GGAUUGGGCAc ugua c  u
UCGA       C           c    - uu

Annotation confidence Not enough data

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Genome context

JH419670.1: 100532-100593 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from pny-mir-125c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-125c

Accession	MIMAT0043005
Description	Pundamilia nyererei pny-miR-125c mature miRNA
Sequence	41 - ACGGGUUAGGCUCUCGGGAGCU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381