miRBase entry: pny-mir-212-2

Stem-loop pny-mir-212-2

Accession

MI0035013

Description

Pundamilia nyererei pny-mir-212-2 precursor miRNA

Sequence

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacaguaacagucuacagucauggcu
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure

-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  gg acuga aucugac aaugac    aug   c
uc  u     c       -      ----   aaa

Annotation confidence Not enough data

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Genome context

JH419559.1: 145647-145713 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-212-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-212-2

Accession	MIMAT0043006
Description	Pundamilia nyererei pny-miR-212-2 mature miRNA
Sequence	1 - ACCUUGGCUUUAGACUGCUUACU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381