miRBase entry: pny-mir-99a

Stem-loop pny-mir-99a


Accession
MI0035018
Description
Pundamilia nyererei pny-mir-99a precursor miRNA


Sequence

AGACCUGUAGAUACAAGCUUGUggugucacuuaacacaaguucggaucuacggguuu
.((((((((((..(.((((((((...........)))))))).)..)))))))))).

Structure
A          UA A        gugu 
 GACCUGUAGA  C AGCUUGUg    c
 ||||||||||  | ||||||||    a
 uugggcaucu  g uugaacac    c
u          ag c        aauu 


Annotation confidence Not enough data
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Genome context
JH419670.1: 108487-108543 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from pny-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-99a

Accession MIMAT0043012
Description Pundamilia nyererei pny-miR-99a mature miRNA
Sequence 1 - AGACCUGUAGAUACAAGCUUGU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381