miRBase entry: pny-mir-27d

Stem-loop pny-mir-27d

Accession

MI0035019

Description

Pundamilia nyererei pny-mir-27d precursor miRNA

Sequence

CAGAACUUAGUUGACUGCUGACCagggagucuugaauauuugUUCACAGUGGCUAAGUUCGUCA
..((((((((((.((((.(((.((((............)))).)))))))))))))))))....

Structure

--CA          G    C   C    gaguc 
    GAACUUAGUU ACUG UGA Cagg     u
    |||||||||| |||| ||| ||||      
    CUUGAAUCGG UGAC ACU guuu     u
ACUG          -    -   U    auaag

Annotation confidence Not enough data

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Genome context

JH419221.1: 2777816-2777879 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-27d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-27d-5p

Accession	MIMAT0043013
Description	Pundamilia nyererei pny-miR-27d-5p mature miRNA
Sequence	1 - CAGAACUUAGUUGACUGCUGACC - 23
Evidence	experimental Illumina [1]

Mature pny-miR-27d-3p

Accession	MIMAT0043014
Description	Pundamilia nyererei pny-miR-27d-3p mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCGUCA - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381