miRBase entry: pny-mir-148

Stem-loop pny-mir-148


Accession
MI0035020
Description
Pundamilia nyererei pny-mir-148 precursor miRNA


Sequence

AAGUUCUGUGAUACACUUAGACUcuaacugcccgcagUCAGUGCAUUACAGAACUUUG
((((((((((((.((((..(((((.........).)))))))).))))))))))))..

Structure
--            A    UA    - uaa 
  AAGUUCUGUGAU CACU  GACU c   c
  |||||||||||| ||||  |||| |   u
  UUCAAGACAUUA GUGA  CUga g   g
GU            C    --    c ccc 


Annotation confidence Not enough data
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Genome context
JH419214.1: 5112194-5112251 [+]

Database links

Mature pny-miR-148-5p

Accession MIMAT0043015
Description Pundamilia nyererei pny-miR-148-5p mature miRNA
Sequence 1 - AAGUUCUGUGAUACACUUAGACU - 23
Evidence experimental
Illumina [1]

Mature pny-miR-148-3p

Accession MIMAT0043016
Description Pundamilia nyererei pny-miR-148-3p mature miRNA
Sequence 38 - UCAGUGCAUUACAGAACUUUG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381