miRBase entry: pny-mir-130b

Stem-loop pny-mir-130b

Accession

MI0035021

Description

Pundamilia nyererei pny-mir-130b precursor miRNA

Sequence

ACUCUUUCCCUGUUGCACUACUgugggagaugcagcaagCAGUGCAAUAAUGAAAGGGCAUC
.(((((((..(((((((((.((((.(......).)).)).)))))))))..)))))))....

Structure

---A       CC         A  -  g ga 
    CUCUUUC  UGUUGCACU CU gu g  g
    |||||||  ||||||||| || || |   
    GGGAAAG  AUAACGUGA ga cg c  a
CUAC       UA         C  a  a gu

Annotation confidence Not enough data

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Genome context

JH419372.1: 1315709-1315770 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-130b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-130b-5p

Accession	MIMAT0043017
Description	Pundamilia nyererei pny-miR-130b-5p mature miRNA
Sequence	1 - ACUCUUUCCCUGUUGCACUACU - 22
Evidence	experimental Illumina [1]

Mature pny-miR-130b-3p

Accession	MIMAT0043018
Description	Pundamilia nyererei pny-miR-130b-3p mature miRNA
Sequence	40 - CAGUGCAAUAAUGAAAGGGCAUC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381