miRBase entry: pny-mir-3120

Stem-loop pny-mir-3120


Accession
MI0035030
Description
Pundamilia nyererei pny-mir-3120 precursor miRNA


Sequence

cugucugugccugcuguacagguuggaggauauucUGCACAGCAAGUGUAGAUAGGC
((((((((((.((((((.((((.((.....)).)))).)))))).))))))))))..

Structure
--          c      a    u  g 
  cugucugugc ugcugu cagg ug a
  |||||||||| |||||| |||| || g
  GAUAGAUGUG ACGACA GUcu au g
CG          A      C    u  a 


Annotation confidence Not enough data
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Genome context
JH419320.1: 891199-891255 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pny-mir-3120
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pny-miR-3120

Accession MIMAT0043027
Description Pundamilia nyererei pny-miR-3120 mature miRNA
Sequence 36 - UGCACAGCAAGUGUAGAUAGGC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381