miRBase entry: pny-mir-430b

Stem-loop pny-mir-430b

Accession

MI0035035

Description

Pundamilia nyererei pny-mir-430b precursor miRNA

Sequence

aucgcgacaauauagguaguuauuugaauucugaauacagUAAGUGCUGAUUGUUGUUGUGU
..((((((((((..((((.(((((..............))))).))))...)))))))))).

Structure

au          -ua    g     ugaauu 
  cgcgacaaua   ggua uuauu      c
  ||||||||||   |||| |||||       
  GUGUUGUUGU   UCGU AAUga      u
-U          UAG    G     cauaag

Annotation confidence Not enough data

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Genome context

JH421421.1: 3623-3684 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-430b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-430b

Accession	MIMAT0043032
Description	Pundamilia nyererei pny-miR-430b mature miRNA
Sequence	41 - UAAGUGCUGAUUGUUGUUGUGU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381