miRBase entry: oni-mir-449c

Stem-loop oni-mir-449c


Accession
MI0035130
Description
Oreochromis niloticus oni-mir-449c precursor miRNA


Sequence

CGGCAGUGUACUGCUGCUGGCUGUgcuauuugacugacagcugucagcugcacuccu
.((.((((((..((((.(((((((............))))))).)))))))))))).

Structure
C  C      CU    C       gcuau 
 GG AGUGUA  GCUG UGGCUGU     u
 || ||||||  |||| |||||||      
 cc ucacgu  cgac gucgaca     u
u  -      --    u       gucag 


Annotation confidence Not enough data
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Genome context
CM001455.1: 25967331-25967387 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oni-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-449c

Accession MIMAT0043112
Description Oreochromis niloticus oni-miR-449c mature miRNA
Sequence 1 - CGGCAGUGUACUGCUGCUGGCUGU - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774