miRBase entry: oni-mir-132c

Stem-loop oni-mir-132c


Accession
MI0035200
Description
Oreochromis niloticus oni-mir-132c precursor miRNA

Literature search
1 open access papers mention oni-mir-132c
(11 sentences)

Sequence

AGCCAUGACUGUAGACUGUUACUguacuuugauacuguauaagcaguaagcagucuaaagccaaggugc
.(((.((.((.((((((((((((((.................))))).))))))))).)).)).)))..

Structure
-A   A  A  G         -     acuuuga 
  GCC UG CU UAGACUGUU ACUgu       u
  ||| || || ||||||||| |||||       a
  ugg ac ga aucugacga ugacg       c
cg   a  c  a         a     aauaugu 


Annotation confidence Not enough data
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Genome context
GL831384.1: 414692-414760 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from oni-mir-132c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-132c

Accession MIMAT0043177
Description Oreochromis niloticus oni-miR-132c mature miRNA
Sequence 1 - AGCCAUGACUGUAGACUGUUACU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774