miRBase entry: oni-mir-142b

Stem-loop oni-mir-142b

Accession

MI0035248

Description

Oreochromis niloticus oni-mir-142b precursor miRNA

Sequence

uccauaaaguaggaaacacuacacuguggcgaggaguuuagUAGUGCUUUCUACUUUAUGGAU
(((((((((((((((.(((((((((.(.....).)))...)))))).))))))))))))))).

Structure

-               a      ---   g g 
 uccauaaaguaggaa cacuac   acu u g
 ||||||||||||||| ||||||   ||| | c
 AGGUAUUUCAUCUUU GUGAUg   uga g g
U               C      auu   g a

Annotation confidence Not enough data

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Genome context

GL831331.1: 273768-273830 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-142b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-142b

Accession	MIMAT0043223
Description	Oreochromis niloticus oni-miR-142b mature miRNA
Sequence	42 - UAGUGCUUUCUACUUUAUGGAU - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774