miRBase entry: oni-mir-219d-1

Stem-loop oni-mir-219d-1

Accession

MI0035271

Description

Oreochromis niloticus oni-mir-219d-1 precursor miRNA

Sequence

agauguccauacacaauucuugggguugaauaugaguuuacucaAGAAUUGCGUUUGGACAAUCAGC
.((((((((.((.(((((((((((..(((((....)))))))))))))))).)).))))).)))...

Structure

--a   -     u  a           gu     a 
   gau gucca ac caauucuuggg  ugaau u
   ||| ||||| || |||||||||||  |||||  
   CUA CAGGU UG GUUAAGAacuc  auuug g
CGA   A     U  C           --     a

Annotation confidence Not enough data

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Genome context

CM001450.1: 22024211-22024277 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-219d-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-219d

Accession	MIMAT0043245
Description	Oreochromis niloticus oni-miR-219d mature miRNA
Sequence	45 - AGAAUUGCGUUUGGACAAUCAGC - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774