miRBase entry: oni-mir-27c

Stem-loop oni-mir-27c

Accession

MI0035416

Description

Oreochromis niloticus oni-mir-27c precursor miRNA

Literature search

1 open access papers mention oni-mir-27c
(1 sentences)

Sequence

caggacuuaacccacaugugaacagugagugucugccaugUUCACAGUGGUUAAGUUCUG
((((((((((((.((.((((((((.((.((....))))))))))))))))))))))))))

Structure

            c  a        g  a  g 
caggacuuaacc ac ugugaaca ug gu u
|||||||||||| || |||||||| || ||  
GUCUUGAAUUGG UG ACACUUgu ac cg c
            -  -        -  -  u

Annotation confidence Not enough data

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Genome context

CM001447.1: 982543-982602 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from oni-mir-27c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-27c

Accession	MIMAT0043380
Description	Oreochromis niloticus oni-miR-27c mature miRNA
Sequence	41 - UUCACAGUGGUUAAGUUCUG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774