miRBase entry: oni-mir-727b

Stem-loop oni-mir-727b


Accession
MI0035467
Description
Oreochromis niloticus oni-mir-727b precursor miRNA

Literature search
1 open access papers mention oni-mir-727b
(13 sentences)

Sequence

UCAGUCUUCAGUUCCUCCCAGCccauaacuauggcagcaauguguugaggcgaguugaagacu
..((((((((((((..((((((.(((..((.....))..))).)))).)).))))))))))))

Structure
UC            CU  -    c   aa  a 
  AGUCUUCAGUUC  CC CAGC cau  cu u
  ||||||||||||  || |||| |||  || g
  ucagaaguugag  gg guug gua  ga g
--            -c  a    u   ac  c 


Annotation confidence Not enough data
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Genome context
CM001452.1: 17708419-17708481 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-727b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-727b

Accession MIMAT0043427
Description Oreochromis niloticus oni-miR-727b mature miRNA
Sequence 1 - UCAGUCUUCAGUUCCUCCCAGC - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774