miRBase entry: oni-mir-181c-1

Stem-loop oni-mir-181c-1


Accession
MI0035468
Description
Oreochromis niloticus oni-mir-181c-1 precursor miRNA

Literature search
2 open access papers mention oni-mir-181c-1
(3 sentences)

Sequence

AACAUUCAACGCUGUCGGUGAGuuugagcucugacugaaaaccaucgaccguugacuguacc
.(((.((((((..(((((((..(((.((......)).)))..))))))))))))).)))...

Structure
--A   U      CU       AG   g  cu 
   ACA UCAACG  GUCGGUG  uuu ag  c
   ||| ||||||  |||||||  ||| ||   
   ugu aguugc  cagcuac  aaa uc  u
cca   c      --       ca   g  ag 


Annotation confidence Not enough data
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Genome context
CM001455.1: 964919-964980 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oni-mir-181c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-181c

Accession MIMAT0043428
Description Oreochromis niloticus oni-miR-181c mature miRNA
Sequence 1 - AACAUUCAACGCUGUCGGUGAG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774