miRBase entry: oni-mir-3553-2

Stem-loop oni-mir-3553-2


Accession
MI0035501
Description
Oreochromis niloticus oni-mir-3553-2 precursor miRNA


Sequence

AUGGCCCUAUGGUAAUUCACUGauagugugcugugacagugaauucuaccagugccauac
(((((....(((((((((((((((((....))))..))))))))..)))))..)))))..

Structure
--     CCUA     --        --    u 
  AUGGC    UGGUA  AUUCACUG  auag g
  |||||    |||||  ||||||||  ||||  
  uaccg    accau  uaagugac  uguc u
ca     --ug     cu        ag    g 


Annotation confidence Not enough data
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Genome context
CM001450.1: 43226399-43226458 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from oni-mir-3553-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oni-miR-3553

Accession MIMAT0043450
Description Oreochromis niloticus oni-miR-3553 mature miRNA
Sequence 1 - AUGGCCCUAUGGUAAUUCACUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25199625
    Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
    Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
    BMC Genomics (2014) 15:774