miRBase entry: oni-mir-10653-2

Stem-loop oni-mir-10653-2

Accession

MI0035537

Description

Oreochromis niloticus oni-mir-10653-2 precursor miRNA

Sequence

agcagcugccucuacggugagucugucguccuguagauguggAUACUGGUCUGCAGCUGCUGG
(((((((((.....((((..(((((.((((.....)))))))))))))....)))))))))..

Structure

--         cucua    ga     u    c 
  agcagcugc     cggu  gucug cguc u
  |||||||||     ||||  ||||| |||| g
  UCGUCGACG     GUCA  UAggu guag u
GG         -UCUG    --     -    a

Annotation confidence Not enough data

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Genome context

CM001457.1: 31393485-31393547 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10653-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-10653

Accession	MIMAT0043147
Description	Oreochromis niloticus oni-miR-10653 mature miRNA
Sequence	43 - AUACUGGUCUGCAGCUGCUGG - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774