miRBase entry: oni-mir-17b-1

Stem-loop oni-mir-17b-1

Accession

MI0035550

Description

Oreochromis niloticus oni-mir-17b-1 precursor miRNA

Literature search

2 open access papers mention oni-mir-17b-1
(2 sentences)

Sequence

uguaagugccuccacugcaguagguauuccauaguacuACCUGCACUGUAAGCACUUUGGC
...((((((...((.(((((..((((((....))))))..))))).))...))))))....

Structure

-ugu      cuc  c     ua      c 
    aagugc   ca ugcag  gguauu c
    ||||||   || |||||  ||||||  
    UUCACG   GU ACGUC  ucauga a
CGGU      AAU  C     CA      u

Annotation confidence Not enough data

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Genome context

CM001444.1: 7384948-7385008 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-17b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-17b

Accession	MIMAT0043499
Description	Oreochromis niloticus oni-miR-17b mature miRNA
Sequence	39 - ACCUGCACUGUAAGCACUUUGGC - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774