miRBase entry: mdm-MIR10978a

Stem-loop mdm-MIR10978a


Accession
MI0035582
Description
Malus domestica mdm-MIR10978a precursor miRNA


Sequence

uauuuccucgaagaaguuaaguccagauguuagagcucaacaacuugcggcaauggauuuaucaauugcccaaguccagucuucucagcaagcuguuucgaaagauuaucaaguuauagggaccucuuuagcuuccgaccgagugcauuuagaagaguuaaagcgggagcgagagcaGUUGGGAAUCGAAGCAUCACGAcuugaagguguucuuuuaaa
.........(((....(((((((..((((((.((.((((((.(((((.((((((.((....)).)))))))))))..(((((((..((((...))))..).)))))).....(((.....)))(((((..(((((((........(........)........))))))))))))..))))))..))..))))))..))))))).....))).......

Structure
uauuuccuc   -gaag       ca      -a  -g      -----------------------------------------------------------------------------------------------------a     c      g  u 
         gaa     uuaaguc  gauguu  ga  cucaac                                                                                                      acuug ggcaau ga u
         |||     |||||||  ||||||  ||  ||||||                                                                                                      ||||| |||||| ||  
         cuu     aguucAG  CUACGA  CU  GGGUUG                                                                                                      ugaac ccguua cu u
--aaauuuu   gugga       CA      AG  AA      acgagagcgagggcgaaauugagaagauuuacgugagccagccuucgauuucuccagggauauugaacuauuagaaagcuuugucgaacgacucuucugacc     -      a  a 


Annotation confidence Not enough data
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Genome context
MDC018881.361: 6703-6921 [-]

Database links

Mature mdm-miR10978a

Accession MIMAT0043527
Description Malus domestica mdm-miR10978a mature miRNA
Sequence 178 - GUUGGGAAUCGAAGCAUCACGA - 199
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812