miRBase entry: mdm-MIR10978b

Stem-loop mdm-MIR10978b


Accession
MI0035583
Description
Malus domestica mdm-MIR10978b precursor miRNA


Sequence

agaaguuaaguccagauguuagagcucaacaacuuacggcaauggauuuaucaauuacccaaguucggucuucucagcaagcuauuucgaaagauuaucaaguuacagggaccucuuuagcuuccgucugagugcguuuagaagaguuagagcgggagcgagaguaGUUGGGAAUCGAAGCAUCACGAcuugaaggu
.....(((((((..((((((.((.(((((((((((..((.(((.((....)).))).)).))))).((((((...(((........((....)).......)))...)))))).((((.((((((((((((.(.(........)).))))).))))))).))))..))))))..))..))))))..)))))))....

Structure
agaag       ca      -a  -g      aacuuacggcaauggauuuaucaauuacccaaguucggucuucucagcaagcuauuucgaaagauuaucaaguuacagggaccu    a       -     g g guu 
     uuaaguc  gauguu  ga  cucaac                                                                                    cuuu gcuuccg ucuga u c   u
     |||||||  ||||||  ||  ||||||                                                                                    |||| ||||||| ||||| | |    
     aguucAG  CUACGA  CU  GGGUUG                                                                                    gaga cgagggc agauu a g   a
-ugga       CA      AG  AA      ----------------------------------------------------------------------------------au    g       g     g - aag 


Annotation confidence Not enough data
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Genome context
MDC018881.351: 4615-4811 [-]

Database links

Mature mdm-miR10978b

Accession MIMAT0043528
Description Malus domestica mdm-miR10978b mature miRNA
Sequence 167 - GUUGGGAAUCGAAGCAUCACGA - 188
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812