Stem-loop mdm-MIR10979

Accession

MI0035584

Description

Malus domestica mdm-MIR10979 precursor miRNA

Sequence

aaacuuuucaacuuugagucugaacauccuuaaugucaguagauuauaaagCUUGCCGAUAGAUUUGGGGAGcauccugauccuuguucuggaaauaucuagauaccucaaguguuucaacuccccaauugacauuggcaacucauugcuaucagccucguauaauuuuaacacacguaagcccuuaaaucu
...........(((((((((((.((((.....))))...)))))).))))).((((((((....((((((((......(((.((((.((((((....)))))).....)))).)))....)))))))).....))))))))......(((...)))....................................

Structure

aaacuuuucaacuuugagucugaacauccuuaaugucaguagauuauaaagC        -AGAU        cauccu   c    ----u      a 
                                                    UUGCCGAU     UUGGGGAG      gau cuug     ucugga a
                                                    ||||||||     ||||||||      ||| ||||     ||||||  
                                                    aacgguua     aaccccuc      uug gaac     agaucu u
-ucuaaauucccgaaugcacacaauuuuaauaugcuccgacuaucguuacuc        caguu        --aacu   u    uccau      a 

Annotation confidence Not enough data

Genome context

MDC008844.651: 2217-2408 [+]

Mature mdm-miR10979

• Accession: MIMAT0043529
• Description: Malus domestica mdm-miR10979 mature miRNA
• Sequence: 52 - CUUGCCGAUAGAUUUGGGGAG - 72
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812