miRBase entry: mdm-MIR10980a

Stem-loop mdm-MIR10980a


Accession
MI0035585
Description
Malus domestica mdm-MIR10980a precursor miRNA


Sequence

aagaugcuuaagucucuggguggaacucccaCACCUGGGACUUGCAGCCAUGuuucccuuaagcaauagggacgggaugcacgagaugcagcaguuggaaacauggcugcaagucucaggugugggaguuccacccagagacuggaacacca
..........(((((((((((((((((((((((((((((((((((((((((((((((((((.....))))(((....((((.....))))...))))))))))))))))))))))))))))))))))))))))))))))))))((....)).

Structure
aagaugcuua                                               cuuaagcaauagg   ggga    c 
          agucucuggguggaacucccaCACCUGGGACUUGCAGCCAUGuuucc             gac    ugca g
          |||||||||||||||||||||||||||||||||||||||||||||||             |||    |||| a
          ucagagacccaccuugaggguguggacucugaacgucgguacaaagg             uug    acgu g
-accacaagg                                               -------------   -acg    a 


Annotation confidence Not enough data
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Genome context
MDC009540.166: 985-1136 [+]

Database links

Mature mdm-miR10980a

Accession MIMAT0043530
Description Malus domestica mdm-miR10980a mature miRNA
Sequence 32 - CACCUGGGACUUGCAGCCAUG - 52
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812