Stem-loop mdm-MIR10980b

Accession

MI0035586

Description

Malus domestica mdm-MIR10980b precursor miRNA

Sequence

aagaugcuuaagucuuugcguggaacucccaCACCUGGGACUUGCAGCCAUGuuuccaauugcagccauguuuuccuuaagcaauagggacgggaugaacgagaugcagcaauuggaaacauggcugcaaguccccagguguggggaguucccacccaaagacuggaacac
..........((((((((.((((((((((((((((((((((((((((((((((((((((((((.(((((.((.((((((.....)))))).)).)))........)).)))))))))))))))))))))))).))))))))).))))))).)))).)))))))).......

Structure

aagaugcuua        c    -       -         -                        a  --------   g  u      a 
          agucuuug gugg aacuccc aCACCUGGG ACUUGCAGCCAUGuuuccaauugc gc        cau uu uccuua g
          |||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||| ||        ||| || |||||| c
          ucagaaac cacc uugaggg uguggaccc ugaacgucgguacaaagguuaacg cg        gua gg agggau a
---cacaagg        c    c       g         c                        a  uagagcaa   g  c      a 

Annotation confidence Not enough data

Genome context

MDC013179.266: 5931-6101 [+]

Mature mdm-miR10980b

• Accession: MIMAT0043531
• Description: Malus domestica mdm-miR10980b mature miRNA
• Sequence: 32 - CACCUGGGACUUGCAGCCAUG - 52
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812