miRBase entry: mdm-MIR159f

Stem-loop mdm-MIR159f


Accession
MI0035596
Description
Malus domestica mdm-MIR159f precursor miRNA

Literature search
11 open access papers mention mdm-MIR159f
(68 sentences)

Sequence

auguggguaggguuaaggaguggagcuccuugaaguccaaaagaaggugaugcuggguggauagagcugcugagcuauggaucccagaguccuauauauccuauaucgcagaucagaucagaugcgaucagaaggaugauaggcuuguggcuugcauaucucaggagcugcauuaccuguacgcugccucuuuuUUUGGAUUGAAGGGAGCUCUAcaccucucucucugucucu
....((((((((...(((.((((((((((((..((((((((((((((((.(((.((((((....((((.(((((.((((.(..(((.((.(((((.((((((..((((((..((......))))))))....))))))))))).)).)))..).)))).))))).))))...)))))))))))).....)))))))))))))..)))))))))))).)))....))))).))).

Structure
augu   -     -uua   a            ga             -----   a   u      auag    g     c    g uc   g  u     a      --au      ga  ag 
    ggg uaggg    agg guggagcuccuu  aguccaaaagaag     gug ugc gggugg    agcu cugag uaug a  cca ag ccuau uauccu    aucgca  uc  a
    ||| |||||    ||| ||||||||||||  |||||||||||||     ||| ||| ||||||    |||| ||||| |||| |  ||| || ||||| ||||||    ||||||  ||   
    cuc gucuc    ucc cAUCUCGAGGGA  UUAGGUUUuuuuc     cgc aug uccauu    ucga gacuc auac u  ggu uu ggaua guagga    uagcgu  ag  u
---u   u     ucuc   a            AG             uccgu   -   -      -acg    g     u    g uc   g  c     -      agac      --  ac 


Annotation confidence Not enough data
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Genome context
MDC011193.509: 3014-3247 [-]

Database links

Mature mdm-miR159f

Accession MIMAT0043541
Description Malus domestica mdm-miR159f mature miRNA
Sequence 195 - UUUGGAUUGAAGGGAGCUCUA - 215
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812