miRBase entry: mdm-MIR530b

Stem-loop mdm-MIR530b


Accession
MI0035598
Description
Malus domestica mdm-MIR530b precursor miRNA

Literature search
1 open access papers mention mdm-MIR530b
(2 sentences)

Sequence

acagcgcagaugccaaaaugaagcuuuuaucUGCAUUUGCACCUGCACUUGUacuaguucuuguuucuuacuuccuugaaaaacccugaaaccaagcuucaaagcauggcaaagguuuuagauguaugagaggaaaaaaaagaagaaaagaggaaaggaauaaaggaauaggaggaaaauggaagucagaaggaagaggaggaacaagcaacaggugcaggugcaagugcaggugaaugccauuuuggaucauuaacacca
........(((.((((((((..((.(((((((((((((((((((((((((((.......((((((((((.(((((((........((((((((..(((.........)))...))))))))..................................................((............))..)))))))..))))))))))..))))))))))))))))))))))))))).)))))))))))))..........

Structure
--acagcgca   g        aa  u                           acuaguu          -a       ------------------------------------------------------------gaaaaacc        -aa   uca 
          gau ccaaaaug  gc uuuaucUGCAUUUGCACCUGCACUUGU       cuuguuucuu  cuuccuu                                                                    cugaaacc   gcu   a
          ||| ||||||||  || |||||||||||||||||||||||||||       ||||||||||  |||||||                                                                    ||||||||   |||   a
          cua gguuuuac  cg aaguggacgugaacguggacguggaca       gaacaaggag  gaaggaa                                                                    gauuuugg   cgg   g
accacaauua   -        --  u                           -----ac          ga       gacugaagguaaaaggaggauaaggaaauaaggaaaggagaaaagaagaaaaaaaaggagaguaugua        aaa   uac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MDC019515.368: 17290-17550 [+]

Database links

Mature mdm-miR530b

Accession MIMAT0043543
Description Malus domestica mdm-miR530b mature miRNA
Sequence 32 - UGCAUUUGCACCUGCACUUGU - 52
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812