Stem-loop mdm-MIR10987

Accession

MI0035607

Description

Malus domestica mdm-MIR10987 precursor miRNA

Sequence

ucucaucrucguaygugguuguacugcucgucguugucgucauccuugucaguauauggagggaaauaugguggaagugguggaugagucugugccuauugauggagcuuuuuuccgccacgauauuuccucuugauucauuuacaaccacccagcccuuugaguuuuguucuugcaccauauugcucuccauucuuccaCCAUAUGUCCCUCCAUAUACUgaugaugacaacgaggagcaguacggcuacguauggcuacguaugacaa
........(((((.(((((((((((((((.((((((((((((......((((((((((((((((.((((((((((((.((((((.((((..((((.(((((.(((((.....)))))...))))).........((((((....................))))))........))))......)))))))))))))))))))))).)))))))))))))))))))))))))))).))))))))))))))).))))).............

Structure

-----ucucaucr     y               g            uccuug                a            u      u    ----cu    ------------------------------------------------c     --a     c 
             ucgua gugguuguacugcuc ucguugucguca      ucaguauauggaggga auaugguggaag ggugga gagu      gugc                                                 uauug   uggag u
             ||||| ||||||||||||||| ||||||||||||      |||||||||||||||| |||||||||||| |||||| ||||      ||||                                                 |||||   ||||| u
             gguau caucggcaugacgag agcaacaguagu      agUCAUAUACCUCCCU UAUACCaccuuc uuaccu cucg      cacg                                                 auagc   gccuu u
aacaguaugcauc     g               g            ------                G            -      -    uuauac    uucuuguuuugaguuucccgacccaccaacauuuacuuaguucuccuuu     acc     u 

Annotation confidence Not enough data

Genome context

MDC016302.308: 5169-5438 [+]

Mature mdm-miR10987

• Accession: MIMAT0043553
• Description: Malus domestica mdm-miR10987 mature miRNA
• Sequence: 201 - CCAUAUGUCCCUCCAUAUACU - 221
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812