miRBase entry: mdm-MIR10988

Stem-loop mdm-MIR10988


Accession
MI0035608
Description
Malus domestica mdm-MIR10988 precursor miRNA


Sequence

uggaaaacgggauacuaacaugaccagaaaccgaugucguuggacuaucgaucacaaucguguguguggauaugucucagagaagggauggaaugauuaagcguuggaaugaauuuccucugacacugccaucagucuuauagacuuauacugaagaggcaugaagaagucuauauaaaacugaugccauugucAGAGAAAAUUCAUUCCAACGCuuaaccauuccaucccuucuuugagacauucacacacaccauugugauugauaauucgacaucgguuucygaucuuguuuguauuccauuuuccaaaga
(((((((.(((((((.((((.((.(.(((((((((((((...((.(((((((((((((.(((((((((((..(((((((((((((((((((((((.((((((((((((((((((((.((((((((.((.(((((((..(((((((((...(((......)).)...)))))))))....))))))).)).)))))))).)))))))))))))))))))).)))))))))))))))))))))))))))))))))).))))))))))))).))))))))))))))).).)).)))).))))))).)))))))....

Structure
----       c       u    u  c a             uug  c             c           ua                       a                    c        c  c       --cu         aua -  aa 
    uggaaaa gggauac aaca ga c gaaaccgaugucg   ga uaucgaucacaau gugugugugga  ugucucagagaagggauggaaug uuaagcguuggaaugaauuu cucugaca ug caucagu    uauagacuu   c ug  g
    ||||||| ||||||| |||| || | |||||||||||||   || ||||||||||||| |||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||    |||||||||   | ||   
    accuuuu ccuuaug uugu cu g cuuuggcuacagc   uu auaguuaguguua cacacacacuu  acagaguuucuucccuaccuuac aauuCGCAACCUUACUUAAA GAGAcugu ac guaguca    auaucugaa   g ac  a
agaa       a       u    u  a y             ---  a             c           --                       c                    A        u  c       aaau         gaa u  gg 


Annotation confidence Not enough data
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Genome context
MDC019830.64: 8505-8818 [-]

Database links

Mature mdm-miR10988

Accession MIMAT0043554
Description Malus domestica mdm-miR10988 mature miRNA
Sequence 195 - AGAGAAAAUUCAUUCCAACGC - 215
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812