Stem-loop mdm-MIR10989b

Accession

MI0035610

Description

Malus domestica mdm-MIR10989b precursor miRNA

Sequence

ggaagagaacaaauugcuuaaggugccauuguggcacauaaaacaccauugucaucgucaaggauuuguccaaaugugcaagaaguggcaucuaucaauuuuacgacaaaaaaugccuugaugucgagaaggucaaggucaugccuaccguuguaaggaucgacugauauugaaagcuuuggugguuccccauuaucuucauugucccuauuaucuacuaacaaccaauagauagauaauggggagccaaCAAAGCUUUUAAUAUCAGUCGAuccucacacuggcagguaagaucuugaacucaucgacaucaaggcuuuucuuuucgcagaauugauggaugacacuucuugcgcauuuggacaaauccuugaggaugucaacgguguuuccgugccacaguggcacccuagucagcuuguucucuuccuuucuaacuug
((((((((((((.(((.(((.((((((((((((((((...(((((((.(((.((((.((((((((((((((((((((((((((((((.((((((((((((((.(((.((.(((.(((((((((((((..((.((((((((.(((((.(((.(((.((((((((((((((((((((((((((.((((((((((((((((((((((.....................)))).)).)))))))))))))))).)))))))))))))))))))))))))).))).))).))))).)))))))).))..))))))))))))).))).)).))).)))))))))))))).)))))))))))))))))))))))))))))).)))).))).)))))))..)))))))))))))))).))).))).))))))))))))...........

Structure

-----------            a   c   a                aua       a   u    g                              g              a   c  a   u             ga  g        a     a   u   a                          g                -  -    ucccuauua 
           ggaagagaacaa uug uua ggugccauuguggcac   aaacacc uug cauc ucaaggauuuguccaaaugugcaagaagug caucuaucaauuuu cga aa aaa gccuugaugucga  ag ucaagguc ugccu ccg ugu aggaucgacugauauugaaagcuuug ugguuccccauuaucu uc auug         u
           |||||||||||| ||| ||| ||||||||||||||||   ||||||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||  || |||||||| ||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||| || ||||         c
           ccuucucuuguu gac gau ccacggugacaccgug   uuugugg aac guag aguuccuaaacagguuuacgcguucuucac guagguaguuaaga gcu uu uuu cggaacuacagcu  uc aguucuag augga ggu aca uccuAGCUGACUAUAAUUUUCGAAAC accgagggguaauaga ag uaac         u
guucaaucuuu            c   u   c                -cc       c   u    g                              a              c   u  c   u             ac  a        a     c   c   c                          a                u  a    caacaauca 

Annotation confidence Not enough data

Genome context

MDC018873.313: 7694-8134 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdm-MIR10989b

Mature mdm-miR10989b

• Accession: MIMAT0043556
• Description: Malus domestica mdm-miR10989b mature miRNA
• Sequence: 251 - CAAAGCUUUUAAUAUCAGUCGA - 272
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812