Stem-loop mdm-MIR10989e

Accession

MI0035613

Description

Malus domestica mdm-MIR10989e precursor miRNA

Sequence

agumuucaaacaaauugcuuaaggugccauuguggcacauaaaacaccauugucauugucaaggauuuguccaaaugugcaagaaguggcauccaucaauucugcgacaaaaaagaccuugaugucgagaaggucaaggucaugcccaccgguguaaggaucgacugauauugaaagcuuuguggcuucccauuauccucauuauccccauuaucuacuaacgacccauagauagauaauggggagccaaCAAAGCUUUUAAUAUCAGUCGAuccucacaccggcggguaagaccuugaacucaucgauaucaaggccuuucuucuuguagaauugauggaugacacuucuugcgcauuuggacaaaucuuuaaggaugucaaugguguuuucgugccacaguggcaccuuaagcagcuuguucucuuccu
........(((((.((((((((((((((((((((((((..((((((((((((.((((.(.((((((((((((((((((((((((((((.((((((((((((((((((.((.((((.((((((((((((..((.((((((((.(((((.(((((((.(((((((((((((((((((((((((((((((((((((((((..............((((((...........)))))))))))))))))))).))))))))))))))))))))))))))).))))))).))))).)))))))).))..)))))))))))).)))).)).)))))))))))))))))).)))))))))))))))))))))))))))).).)))).)))))))))))).)))))))))))))))))))))))).)))))........

Structure

agumuuca     a                        au            u    g c                            g                  c  a    a            ga  g        a     a       a                           -              cucauuauccccau      cuaa 
        aacaa uugcuuaaggugccauuguggcac  aaaacaccauug cauu u aaggauuuguccaaaugugcaagaagug cauccaucaauucugcga aa aaag ccuugaugucga  ag ucaagguc ugccc ccggugu aggaucgacugauauugaaagcuuugu ggcuucccauuauc              uaucua    c
        ||||| ||||||||||||||||||||||||  |||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||||  || |||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||              ||||||    g
        uuguu gacgaauuccacggugacaccgug  uuuugugguaac guag a uuucuaaacagguuuacgcguucuucac guagguaguuaagauguu uu uuuc ggaacuauagcu  uc aguuccag auggg ggccaca uccuAGCUGACUAUAAUUUUCGAAACa ccgagggguaauag              auagau    a
uccuucuc     c                        -c            u    g a                            a                  c  c    c            ac  a        a     c       c                           a              --------------      accc 

Annotation confidence Not enough data

Genome context

MDC018484.243: 4579-5009 [-]

Mature mdm-miR10989e

• Accession: MIMAT0043559
• Description: Malus domestica mdm-miR10989e mature miRNA
• Sequence: 251 - CAAAGCUUUUAAUAUCAGUCGA - 272
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812