Stem-loop mdm-MIR10990

Accession

MI0035614

Description

Malus domestica mdm-MIR10990 precursor miRNA

Sequence

accggaggagccgccuucauuaaguuuuacuaggaauggcuugaagauguuuugagcugcuccaaagaugugcuuaccaacauaggccuuuaucauguuguauaugcaucuuuguucaguuaugauugccauccuuccguccgucgugcauucuuuuagcauugguguucaacaaccaacacacuucacacgacucaaggggagaugucauuucacuuaaggaucuucacaagauaggaagcuugccgauCCAAGGAAAAUUUUAUGACGAgguuguuccuaguguggag
.(((.((((((.((((((((.((((((..((.(((.((((.(((((((.((((((((((...((((((((((..(((.(((((.((......))))))))))..))))))))))..)))...(((.((.((((.((((....((((((.............(((((........))))).........))))))....)))).)))).))..))))))))))))))))).(((........))))))).))).))..)))))).))))..)))).)))))...).)))..

Structure

-a   g ---     c    --    u      ua  a   a    --------------u       g       cugcuccaaagaugugcuuaccaacauaggccuuuaucauguuguauaugcaucuuuguucaguua   -u  c    c    gucc      cauucuuuuagca     guu 
  ccg a   ggagc gccu  ucau aaguuu  cu gga uggc               ugaagau uuuugag                                                                  uga  ug cauc uucc    gucgug             uuggu   c
  ||| |   ||||| ||||  |||| ||||||  || ||| ||||               ||||||| |||||||                                                                  |||  || |||| ||||    ||||||             |||||    
  ggu u   ccuug uggA  AGUA UUUAAA  GA CCu gccg               acuucua ggaauuc                                                                  acu  ac guag gggg    cagcac             aacca   a
ga   g gau     u    GC    U      AG  A   a    uucgaaggauagaac       -       ------------------------------------------------------------------   uu  u    a    aacu      ----acuucacac     aca 

Annotation confidence Not enough data

Genome context

MDC009251.399: 540-829 [+]

Mature mdm-miR10990

• Accession: MIMAT0043560
• Description: Malus domestica mdm-miR10990 mature miRNA
• Sequence: 251 - CCAAGGAAAAUUUUAUGACGA - 271
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812