miRBase entry: mdm-MIR10991b

Stem-loop mdm-MIR10991b


Accession
MI0035616
Description
Malus domestica mdm-MIR10991b precursor miRNA


Sequence

ccuusggacccaaaugaayugaguccaaagaucaaaugauyCGAGCCAUUGAAAUUCGAUCCaacggcugcaauuuuuauaacuuuuagaggaccccuuguuuguagucguuggaucaaauuucaaugacucggaucauuugaugagugggcucaguuucuuuggaucccgaa
.....(((.(((((.(((.((((((((...((((((((((.((((.((((((((((.((((((((((((((((...............((((...))))..)))))))))))))))).)))))))))).)))).))))))))))...)))))))).))).))))).)))....

Structure
ccuus   c     u   y        aag          y    C          C                uuuuuauaacuuuua    a 
     gga ccaaa gaa ugagucca   aucaaaugau CGAG CAUUGAAAUU GAUCCaacggcugcaa               gagg  
     ||| ||||| ||| ||||||||   |||||||||| |||| |||||||||| ||||||||||||||||               |||| c
     ccu gguuu uuu acucgggu   uaguuuacua gcuc guaacuuuaa cuagguugcugauguu               uucc  
-aagc   a     c   g        gag          g    a          a                -------------ug    c 


Annotation confidence Not enough data
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Genome context
MDC005447.312: 1469-1641 [+]

Database links

Mature mdm-miR10991b

Accession MIMAT0043562
Description Malus domestica mdm-miR10991b mature miRNA
Sequence 42 - CGAGCCAUUGAAAUUCGAUCC - 62
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812