Stem-loop mdm-MIR10992

Accession

MI0035620

Description

Malus domestica mdm-MIR10992 precursor miRNA

Sequence

cuuccaauuggaaacauuguguccuuacuggagcauaacauaguuuuaaaugcuuugugcaugauacgaagaaauugaaugcuggugguugggguucuucauacaccauaacaaauuauuacucaguacuaCAUAACAAAUUAUUACUCAGUaccaaguaaauuaagaaauacaccuaccauacuuccauuguccuuucuaugacaacaacuuucaaggacaauggaaguaugguagguguaucucuuaauuuacuuguacugaguaauaauuuguuaugugguacugaguaauaauuuguuaugauguaugaagaaccccaaccaccagcauucaauuuauucguaccaugcacagagccuuuaaaacuauguuaagguucaguaaggacacaguguuucc
.........(((((((((((((((((((((((.(.(((((((((((((((.((((((((((((.((((((.((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((.((((((((((((((((((((((((((((..................)))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))).)))))).)))))))))))).))))))))))))))).).)))))))))))))))))))))))

Structure

cuuccaauu                       g a               u            a      g                                  c                                                c             a                            ucuaugac 
         ggaaacauuguguccuuacugga c uaacauaguuuuaaa gcuuugugcaug uacgaa aaauugaaugcuggugguugggguucuucauaca cauaacaaauuauuacucaguacuaCAUAACAAAUUAUUACUCAGUac aaguaaauuaaga auacaccuaccauacuuccauuguccuu        a
         ||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||         
         ccuuugugacacaggaaugacuu g auuguaucaaaauuu cgagacacguac augcuu uuuaacuuacgaccaccaaccccaagaaguaugu guauuguuuaauaaugagucaugguguauuguuuaauaaugagucaug uucauuuaauucu uauguggaugguaugaagguaacaggaa        a
---------                       g a               c            c      a                                  a                                                -             c                            cuuucaac 

Annotation confidence Not enough data

Genome context

MDC017456.160: 13529-13930 [-]

Mature mdm-miR10992

• Accession: MIMAT0043566
• Description: Malus domestica mdm-miR10992 mature miRNA
• Sequence: 132 - CAUAACAAAUUAUUACUCAGU - 152
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812