miRBase entry: mdm-MIR319f

Stem-loop mdm-MIR319f


Accession
MI0035622
Description
Malus domestica mdm-MIR319f precursor miRNA

Literature search
4 open access papers mention mdm-MIR319f
(7 sentences)

Sequence

gaucuuagagauaguuuraguGAGCUUUCUUCAGUCCACUCauggaagggcaaaggguuugaauuagcugccgacucauucauucaaacucaguagaaauggaguggauauuucwacugugaaugugugaaugaugcgggagauaacuucauucuuuucuucucugugcuuggacugaagggagcucccuuuuacugucuucuuugu
.......((((((((...((.(((((((((((((((((..((((((.(((.((((((..(((((((.((.(((..((((((((.((..(.((((.((((((.......)))))).)))).)..)).))))))))..))).)).))).)))).))))))))).))))))..))))))))))))))))).))...))))))))......

Structure
gaucuua        uur  u                 CU      a   c      uu    -   g  g   ac        u  aa u    a      ga 
       gagauagu   ag GAGCUUUCUUCAGUCCA  Caugga ggg aaaggg  ugaa uua cu ccg  ucauucau ca  c cagu gaaaug  g
       ||||||||   || |||||||||||||||||  |||||| ||| ||||||  |||| ||| || |||  |||||||| ||  | |||| ||||||  u
       uucuguca   uc cucgagggaagucaggu  gugucu uuc uuuucu  acuu aau ga ggc  aguaagug gu  g guca cuuuau  g
-uguuuc        uuu  c                 uc      c   -      -u    c   a  g   gu        u  aa u    w      ag 


Annotation confidence Not enough data
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Genome context
MDC009430.318: 14032-14238 [-]

Database links

Mature mdm-miR319f

Accession MIMAT0043568
Description Malus domestica mdm-miR319f mature miRNA
Sequence 22 - GAGCUUUCUUCAGUCCACUC - 41
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812