Stem-loop mdm-MIR10993a

Accession

MI0035624

Description

Malus domestica mdm-MIR10993a precursor miRNA

Sequence

ccuacaucgacgcuuaagaacucagagguuaacuuucucauuggggggaaauuuuuuguuaugacaggaacacgagugguacaccacguguuuuuauauaagugguggaaaauuuuwuuuuuuaaguuauuaacuuuuuaacacacAUCCCACCAUUUAUAUAGCGAcacaugguguaccaccccgugugacggucacacugaaaaaumucuucucauugggaguccuaacuuucguuuacauugggauauuguug
.......((((((((((((((...(((((((...((((((.((((((((.((((((((...((((.(..(((((.(((((((((((.(((((.(((((((((((((((...............(((((...))))).............))))))))))))))).))))).)))))))))))..)))))..).))))...)))))))).)))))))).))))))...))))))).))))...)))))....)))))

Structure

ccuacau     ----     ---    uca       acu      u        a        uua    a ga     -a           c     u               aaaauuuuwuuuuuu     a 
       cgacg    cuuaa   gaac   gagguua   uucuca ugggggga auuuuuug   ugac g  acacg  gugguacacca guguu uuauauaaguggugg               aaguu  
       |||||    |||||   ||||   |||||||   |||||| |||||||| ||||||||   |||| |  |||||  ||||||||||| ||||| |||||||||||||||               ||||| u
       guugu    ggguu   uuug   uuucaau   gagggu acucuucu uaaaaagu   acug c  ugugc  caccauguggu cacAG GAUAUAUUUACCACC               uucaa  
-------     uaua     aca    --c       ccu      u        m        cac    g ag     cc           a     C               --CUAcacacaauuu     u 

Annotation confidence Not enough data

Genome context

MDC041996.8: 2864-3119 [+]

Mature mdm-miR10993a

• Accession: MIMAT0043570
• Description: Malus domestica mdm-miR10993a mature miRNA
• Sequence: 147 - AUCCCACCAUUUAUAUAGCGA - 167
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812