miRBase entry: mdm-MIR169i

Stem-loop mdm-MIR169i


Accession
MI0035630
Description
Malus domestica mdm-MIR169i precursor miRNA

Literature search
5 open access papers mention mdm-MIR169i
(10 sentences)

Sequence

uuucaucuuaagucuugcaugugggaaugagguaugcagugCAGCCAAGGAUGACUUGCCGGcagcaauauauauucaguuacaauauuauauaucaaccckuaucuucuauauauauguauauguacauwgcauauauaugggauguaucauguauauauguugaugucaucucaugcauauawgruacagaaagauacacgaucuugugacaaugagauggucggcaagucgucucuggcuacauuuuugccuccuuuucucaugcuagauuguuaugauga
..(((((...(((((.(((((.(((((.((((((...((((.(((((.(((((((((((((((..((((((((((.(((.((((......................((((((((((((((...........)))))))))))))))))).).)).))))))))))....(((((((((((((............((((.....)))))))).).))))))))))))))))))))))).))))).))))..)))))).))))).))))).))))).....)))))

Structure
uu     --uua     u     u     u      ugc    C     A               agcaauauauauucaguuacaauauuauauaucaaccckuaucuucuauauauauguauauguacauwgcauauauaugggauguaucauguauauauguugaugu        - -    uawgruacagaa    a 
  ucauc     agucu gcaug gggaa gaggua   agug AGCCA GGAUGACUUGCCGGc                                                                                                          caucucau g caua            agau c
  |||||     ||||| ||||| ||||| ||||||   |||| ||||| |||||||||||||||                                                                                                          |||||||| | ||||            |||| a
  aguag     uuaga cguac cuuuu cuccgu   uuac ucggu ucugcugaacggcug                                                                                                          guagagua c gugu            ucua c
--     uauug     u     u     c      -uu    a     c               ----------------------------------------------------------------------------------------------------------        a a    ------------    g 


Annotation confidence Not enough data
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Genome context
MDC021880.124: 31614-31897 [-]

Database links

Mature mdm-miR169i

Accession MIMAT0043577
Description Malus domestica mdm-miR169i mature miRNA
Sequence 42 - CAGCCAAGGAUGACUUGCCGG - 62
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812