miRBase entry: mdm-MIR171p

Stem-loop mdm-MIR171p


Accession
MI0035635
Description
Malus domestica mdm-MIR171p precursor miRNA

Literature search
9 open access papers mention mdm-MIR171p
(40 sentences)

Sequence

uuuugauggagaaaguugugaauacauagcaaagguauuggcgcgccucaauuugaacgcguggcuaauaucggagacuuagccauacgauucuaaUUGAGCCGCGUCAAUAUCUCCuuuugcaucuuucuccauccaucccuuca
....(((((((((((.((((((.....((...(((((((((((((.(((((((.(((((.((((((((..........)))))))).)).))).))))))).))))))))))))).)))))))).)))))))))))..........

Structure
------uuuu           u      uacau  caa             c       u   -  c        uauc 
          gauggagaaag ugugaa     ag   agguauuggcgcg cucaauu gaa cg guggcuaa    g
          ||||||||||| ||||||     ||   ||||||||||||| ||||||| ||| || ||||||||     
          cuaccucuuuc acguuu     uC   UCUAUAACUGCGC GAGUUaa cuu gc uaccgauu    g
acuucccuac           u      -----  --C             C       u   a  a        caga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MDC015454.116: 3728-3873 [+]

Database links

Mature mdm-miR171p

Accession MIMAT0043582
Description Malus domestica mdm-miR171p mature miRNA
Sequence 97 - UUGAGCCGCGUCAAUAUCUCC - 117
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812