Stem-loop mdm-MIR10998

Accession

MI0035638

Description

Malus domestica mdm-MIR10998 precursor miRNA

Sequence

ugguugugcacguuugcaguccuagayugaaucccaaggauaucagguugauuuuugaacuuuaucuuagagagagauugagagaguugaaaaaaaaugggcuaguuagucuuuuuguuucggacaucaggaauauuuuuagaauauuuuaaggauauucuugauguccgaacaaaaagacuaaucagcccauuuuuucccacucucucaaucucucuaaaaaacaaaguucuaaaaucgacccgauaucCUUGGGAUUCAGUCUAGGACUUcaaccuugcauagccauauugccaaucau
((((((((((.(.(((.(((((((((.(((((((((((((((((.((((((((((.(((((((.......(((((((((((((((((.(..((((((((((((.(((((((((((((((.(((((((((((((((((((((((....)))))))))))))))))))))))))))))))))))))).))))))))))))..)))))))))))))))))).......))))))).)))))))))).))))))))))))))))).))))))))).))).).)))))))))).............

Structure

-------------          c u   c         y                 a          u       aucuuag                 u aa            a               u                       a 
             ugguugugca g uug aguccuaga ugaaucccaaggauauc gguugauuuu gaacuuu       agagagauugagagagu g  aaaaaaugggcu guuagucuuuuuguu cggacaucaggaauauuuuuaga u
             |||||||||| | ||| ||||||||| ||||||||||||||||| |||||||||| |||||||       ||||||||||||||||| |  |||||||||||| ||||||||||||||| |||||||||||||||||||||||  
             accgauacgu c aac UCAGGAUCU ACUUAGGGUUCcuauag ccagcuaaaa cuugaaa       ucucucuaacucucuca c  uuuuuuacccga uaaucagaaaaacaa gccuguaguucuuauaggaauuu a
uacuaaccguuau          u c   U         G                 c          u       caaaaaa                 - cc            c               -                       u 

Annotation confidence Not enough data

Genome context

MDC022659.316: 23619-23919 [-]

Mature mdm-miR10998

• Accession: MIMAT0043585
• Description: Malus domestica mdm-miR10998 mature miRNA
• Sequence: 251 - CUUGGGAUUCAGUCUAGGACUU - 272
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812