miRBase entry: mdm-MIR10993f

Stem-loop mdm-MIR10993f


Accession
MI0035643
Description
Malus domestica mdm-MIR10993f precursor miRNA


Sequence

ccgagagaaauuuuuuauugugauuggaacaagagugcuacaucauguauuuuuauauaagugauagaaaauuuuaauaauacacauaucucaccauuuguauaguuACAUGUGGUGUACCAUCCUGUguuucggucacacugaaaaguuucucuau
...((((((((((((((.(((((((((((((((.(((.((((((((((....(((((((((((..(((....................)))...)))))))))))....)))))))))).))).)).))))))))))))).))))))))))))))..

Structure
ccg              u             -  a   c          auuu           -au   aaauuuuaa 
   agagaaauuuuuua ugugauuggaaca ag gug uacaucaugu    uuauauaagug   aga         u
   |||||||||||||| ||||||||||||| || ||| ||||||||||    |||||||||||   |||          
   ucucuuugaaaagu acacuggcuuugU UC UAC AUGUGGUGUA    gauauguuuac   ucu         a
-ua              c             G  C   C          CAuu           cac   auacacaua 


Annotation confidence Not enough data
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Genome context
MDC013698.229: 8957-9113 [+]

Database links

Mature mdm-miR10993f

Accession MIMAT0043590
Description Malus domestica mdm-miR10993f mature miRNA
Sequence 108 - ACAUGUGGUGUACCAUCCUGU - 128
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812