miRBase entry: mdm-MIR11002c

Stem-loop mdm-MIR11002c


Accession
MI0035649
Description
Malus domestica mdm-MIR11002c precursor miRNA


Sequence

caacaaccuacuccaaccaccCCCAGUCACCUCCGAAGCUCAuccucacgcaaaguuccuuuucuuuuucuaucucucuccucgagauccuucucucuugaauucuugcacuagaucgugauccauucauccaucuagucaaacaacaaauguuuuguggaguuggaaauuugagaauggaagauauagugaggaauucgauagagaaagaucucgaggagagagagaaggaacuuugcggucgguGAGGAUGAGCUUCGGCGGUGAcuggggugguuggaaucuuucuua
...........((((((((((((.(((((((.((((((((((((((((((((((((((((((..........(((((((((((((((((.((((((.((((((((((.(((((.(((....(((((((.((((((((...(((((.....)))))..))))..)))).......))))))).))).))))))))))))))).)))))).)))))))))))))))))))))))))))))).....))))))))))))))))).)))))))))))))))))))..........

Structure
caacaaccuac            C       U                 -----             ucuuuuucua                 c      c          g     g   guga       ------a    --    guc     a 
           uccaaccaccCC AGUCACC CCGAAGCUCAuccucac     gcaaaguuccuuu          ucucucuccucgagauc uucucu uugaauucuu cacua auc    uccauuc       ucca  ucua   aaaca c
           |||||||||||| ||||||| |||||||||||||||||     |||||||||||||          ||||||||||||||||| |||||| |||||||||| ||||| |||    |||||||       ||||  ||||   ||||| a
           agguuggugggg ucAGUGG GGCUUCGAGUAGGAGug     cguuucaaggaag          agagagaggagcucuag aagaga agcuuaagga gugau uag    agguaag       aggu  aggu   uuugu a
-auucuuucua            -       C                 gcugg             ----------                 a      u          -     a   ---a       aguuuaa    ug    -gu     a 


Annotation confidence Not enough data
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Genome context
MDC010482.578: 8757-9047 [-]

Database links

Mature mdm-miR11002c-5p

Accession MIMAT0043596
Description Malus domestica mdm-miR11002c-5p mature miRNA
Sequence 22 - CCCAGUCACCUCCGAAGCUCA - 42
Evidence experimental
Illumina [1]

Mature mdm-miR11002c-3p

Accession MIMAT0043597
Description Malus domestica mdm-miR11002c-3p mature miRNA
Sequence 247 - GAGGAUGAGCUUCGGCGGUGA - 267
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812