miRBase entry: mdm-MIR11001

Stem-loop mdm-MIR11001


Accession
MI0035651
Description
Malus domestica mdm-MIR11001 precursor miRNA


Sequence

aauaucaacuugaacuuugaugugaguauuucacuaucaauuuguuucaacucaaauguacuauucuucaucaauugaaauaggauagagucuaucucuguagagaugaucaagacuucaccauccauaaauuugaucauauaacuuggauaauuugaacuuauuucacaaauuugauaggaagaagucguauauauauccaaguuauaugaacaaauuuguggaugacaaagucuugaucaucucUACAAAGAUGGACUCCACCCUAuuucaguuggugaagaauaguccacuugaguggaaacaaauugauagugaaauucucacaucgaaguucaaguuaauauugagguaagu
(((((.((((((((((((((((((((.(((((((((((((((((((((.((((((.((.(((((((((((((((((((((((((...((((((((((.((((((((((((((((((((...((((((((((((((.((((((((((((((((((.(((.(((.((((............)))).)))))).))...)))))))))))))))).))))))))))))))...)))))))))))))))))))).))))))))))...))))))))))))))))))))))))).)).)))))).))))))))))))))))))))).)))))))))))))))))))).))))).........

Structure
---------     c                    u                     a      a  u                         aua          c                    cac              a                ---  u   a   a    acaaa 
         aauau aacuugaacuuugaugugag auuucacuaucaauuuguuuc acucaa ug acuauucuucaucaauugaaauagg   gagucuaucu uguagagaugaucaagacuu   cauccauaaauuug ucauauaacuuggaua   au uga cuu uuuc     u
         ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||   |||||||||||||| ||||||||||||||||   || ||| ||| ||||      
         uuaua uugaacuugaagcuacacuc uaaagugauaguuaaacaaag ugaguu ac ugauaagaagugguugacuuuAUCC   CUCAGGUAGA ACAUcucuacuaguucugaa   guagguguuuaaac aguauauugaaccuau   ua gcu gaa aagg     u
ugaauggag     a                    u                     g      c  c                         CAC          A                    aca              a                aua  u   -   g    auagu 


Annotation confidence Not enough data
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Genome context
MDC008938.426: 3794-4150 [-]

Database links

Mature mdm-miR11001

Accession MIMAT0043599
Description Malus domestica mdm-miR11001 mature miRNA
Sequence 247 - UACAAAGAUGGACUCCACCCUA - 268
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812