Stem-loop mdm-MIR11002a

Accession

MI0035652

Description

Malus domestica mdm-MIR11002a precursor miRNA

Sequence

ccuacuccaacuacuccuagucaccaccgaagcucaucuucacugccggcaaaguuccuuuucuuucucuaucucucucgagaucuuucucucuugaauucucgcacuagaucgugauccauucauccauccagucaaacaacaaauguuuuguggaguuggaaauuugagaauagaagauauagugaagaauucgauagagaaggagagagauagagaaggaacuuugcggucgguGAGGAUGAGCUUCGGCGGUGAcuggggugguuggaaucuu
.....(((((((((.((((((((((.((((((((((((((((((((((.((((((((((......((((((((((((((......(((((((.(((((((((..(((((.(((....((((....((((((((...(((((.....)))))..))))..))))....)).))......))).))))).))))))))).)))))))))))))))))))))))))))))))))).))))))))))))))))))).))))))))))))))))))).....

Structure

ccuac         u          a                   -   g          uuucuu              gagauc       c         cg     g   --guga  -  uuca    --    guc     a 
     uccaacuac ccuagucacc ccgaagcucaucuucacug ccg caaaguuccu      ucucuaucucucuc      uuucucu uugaauucu  cacua auc      uc ca    ucca  ucca   aaaca c
     ||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||      ||||||||||||||      ||||||| |||||||||  ||||| |||      || ||    ||||  ||||   ||||| a
     agguuggug gggucAGUGG GGCUUCGAGUAGGAGuggc ggc guuucaagga      agagauagagagag      gaagaga agcuuaaga  gugau uag      ag gu    aggu  aggu   uuugu a
uucua         -          C                   u   -          ------              ------       u         -a     a   aagaua  a  uuaa    ug    -gu     a 

Annotation confidence Not enough data

Genome context

MDC020654.421: 3249-3525 [-]

Mature mdm-miR11002a

• Accession: MIMAT0043600
• Description: Malus domestica mdm-miR11002a mature miRNA
• Sequence: 238 - GAGGAUGAGCUUCGGCGGUGA - 258
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812