miRBase entry: mdm-MIR11002b

Stem-loop mdm-MIR11002b


Accession
MI0035653
Description
Malus domestica mdm-MIR11002b precursor miRNA


Sequence

ccuacuccaacuacuccuagucaccgccgaagcucaucuucacugccgguaaaguuccuuuucuuucucuaucucucucaagaucuuucucucuugaauucucgcacuagaucgugaucaauucauccauccagucaaacaacaaauguuuuguggaguuggaaauuugagaauagaagauauagugaagaauucgauagagaaggagagagauagagaaggaacuuugcggucaguGAGGAUGAGCUUCGGCGGUGAcuggggugguuggaaucuu
.....(((((((((.(((((((((((((((((((((((((((((((((.((((((((((......((((((((((((((......(((((((.(((((((((..(((((.(((((..((((....((((((((...(((((.....)))))..))))..))))...))))..))....))).))))).))))))))).)))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))).....

Structure
ccuac         u                              -   g          uuucuu              aagauc       c         cg     g   ----  ga    uuca    --    guc     a 
     uccaacuac ccuagucaccgccgaagcucaucuucacug ccg uaaaguuccu      ucucuaucucucuc      uuucucu uugaauucu  cacua auc    gu  ucaa    ucca  ucca   aaaca c
     ||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||      ||||||||||||||      ||||||| |||||||||  ||||| |||    ||  ||||    ||||  ||||   ||||| a
     agguuggug gggucAGUGGCGGCUUCGAGUAGGAGugac ggc guuucaagga      agagauagagagag      gaagaga agcuuaaga  gugau uag    ua  aguu    aggu  aggu   uuugu a
uucua         -                              u   -          ------              ------       u         -a     a   aaga  ag    -uaa    ug    -gu     a 


Annotation confidence Not enough data
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Genome context
MDC020654.438: 929-1205 [-]

Database links

Mature mdm-miR11002b

Accession MIMAT0043601
Description Malus domestica mdm-miR11002b mature miRNA
Sequence 238 - GAGGAUGAGCUUCGGCGGUGA - 258
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812