miRBase entry: mdm-MIR11003

Stem-loop mdm-MIR11003


Accession
MI0035654
Description
Malus domestica mdm-MIR11003 precursor miRNA


Sequence

ggaauuuuuuuugugugaauuucrgaaauuuguaaauuguguauguucauuguauaucguauaguuauaaaaaaauuuygaauuuuuauuuaaaaauaaucauaaauaauauuugauaaaaayugacuACACAAUAUACGAUGAACAGAcrcaauucacaaauuccuaaaaucuucgucaaaaugaucu
........(((((((...((((..(.(((((((.(((((.((.((((((((((((((.((.((((((...(((((((...)))))))...........((((...........))))......)))))).)).)))))))))))))).)).))))).))))))).)..))))...)).)))))......

Structure
ggaauuuu     -  uga    cr a       a     u  a              c  a      ---------------------------------uaa       u 
        uuuug ug   auuu  g aauuugu aauug gu uguucauuguauau gu uaguua                                    aaaaauu  
        ||||| ||   ||||  | ||||||| ||||| || |||||||||||||| || ||||||                                    ||||||| y
        aaaac gc   uaaa  c uuaaaca uuaac cA ACAAGUAGCAUAUA CA Aucagu                                    uuuuuaa  
--ucuagu     u  uuc    au c       c     r  G              A  C      yaaaaauaguuuauaauaaauacuaauaaaaauuua       g 


Annotation confidence Not enough data
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Genome context
MDC017203.93: 41410-41598 [+]

Database links

Mature mdm-miR11003

Accession MIMAT0043602
Description Malus domestica mdm-miR11003 mature miRNA
Sequence 129 - ACACAAUAUACGAUGAACAGA - 149
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812