miRBase entry: mdm-MIR11005

Stem-loop mdm-MIR11005


Accession
MI0035656
Description
Malus domestica mdm-MIR11005 precursor miRNA


Sequence

guugucaccuucagggauguuguucccuuggucuucuacugucggggcauggucgucuucgaugcuuucuuCUACUAUAUGGUCGUACACAUCuagguugcugucauuguuggcaaauuggaaacaaugauagcgacugucgggcaaauuugucauuauugguaaauuggucguacacaucuacugucuggccauccaauuugccaacagugacgucaaccuagauguguaugaccauauaguagaagaaaacauuaaagacgacuaugcccugauaguagaaaaccaaggcgacaacaucccuggagaugagcu
....(((.((((((((((((((((.(((((((.((((((((((((((((((((((((((.((((.(((((((((((((((((((((((((((((((((((.(((((((((((((((((((((......(((((.((.(((..(((.(((((((((....))))))))).)))..)))..))..)))))......))))))))))))))))))))).))))))))))))))))))))))))))))))))))).)))).)))))))))))))))))))))))))).))))))).)))))))))))))))).)))...

Structure
guug   c                c       c                          c    c                                   c                     aacaau     -c  -c   cg   a         u 
    uca cuucagggauguuguu ccuuggu uucuacugucggggcauggucgucuu gaug uuucuuCUACUAUAUGGUCGUACACAUCuagguug ugucauuguuggcaaauugga      gauag  ga  ugu  ggc aauuuguca u
    ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      |||||  ||  |||  ||| |||||||||  
    agu gaggucccuacaacag ggaacca aagaugauagucccguaucagcagaa uuac aaagaagaugauauaccaguauguguagauccaac gcagugacaaccguuuaaccu      cuguc  cu  aca  cug uuaaauggu a
-ucg   a                c       a                          a    a                                   u                     accggu     au  ac   ug   g         u 


Annotation confidence Not enough data
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Genome context
MDC019212.115: 11817-12131 [+]

Database links

Mature mdm-miR11005

Accession MIMAT0043604
Description Malus domestica mdm-miR11005 mature miRNA
Sequence 72 - CUACUAUAUGGUCGUACACAUC - 93
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812