Stem-loop mdm-MIR11007

Accession

MI0035659

Description

Malus domestica mdm-MIR11007 precursor miRNA

Sequence

aaucgauaaaaguagucyaugagauuguccgCCGUCAAUUAUUUUGGUACGUuaaugaaaaaucuccguuaaauugaggguauauuugucaaaucaacuccuccacuuycacugauuucyucaauuuaacgaagauuuuucacaaaaaugaccaaaaugauugacgguggauaaucucagagacuacuucuauuaau
....((((.((((((((..(((((((((((((((((((((((((((((.((((..((((((((((.(((((((((((.((...........(((((................))))))).))))))))))).))))))))))....)))))))))))))))))))))))))))))))))..)))))))).))))...

Structure

aauc    a        ya                             A    --aa          c           g  uauauuuguca     acuccuc 
    gaua aaguaguc  ugagauuguccgCCGUCAAUUAUUUUGGU CGUu    ugaaaaaucu cguuaaauuga gg           aauca       c
    |||| ||||||||  ||||||||||||||||||||||||||||| ||||    |||||||||| ||||||||||| ||           |||||        
    uuau uucaucag  acucuaauagguggcaguuaguaaaacca guaa    acuuuuuaga gcaauuuaacu cu           uuagu       a
-uaa    c        ag                             -    aaac          a           y  -----------     cacyuuc 

Annotation confidence Not enough data

Genome context

MDC021658.160: 16245-16441 [-]

Mature mdm-miR11007

• Accession: MIMAT0043607
• Description: Malus domestica mdm-miR11007 mature miRNA
• Sequence: 32 - CCGUCAAUUAUUUUGGUACGU - 52
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812