miRBase entry: mdm-MIR10984b

Stem-loop mdm-MIR10984b


Accession
MI0035661
Description
Malus domestica mdm-MIR10984b precursor miRNA


Sequence

agguucggagcuugauccucuuggaggcugaaaucgcaccuucucgggacagcacacaugaguuuaugaGGUAAUUGACUGUGAAAUCGUgguugguuucygucugaggugaaauaucugcaaagugguuuuaagacrawwuygucuuuagguucaaswcagaaaucucggaarccaaccacgauuucacagucaauuaccuyauaaaCUCACGUACGCUGUCCCGAGAAgugugauuucagccuccaagagggucaagcugcgguccc
.((.(((.(((((((((((((((((((((((((((((((.(((((((((((((..((.(((((((((.((((((((((((((((((((((((((((......((((((((......((((.....(((.((((((((......))).))))).)))...)))).))))))))..)))))))))))))))))))))))))))).))))))))).))..)))))))))))))))))))))))))))))))))))))))))))).))).)).

Structure
a  u   g                               c             ac  a         g                            uuucyg        gaaaua    caaag   u     -   ra 
 gg ucg agcuugauccucuuggaggcugaaaucgcac uucucgggacagc  ac ugaguuuau aGGUAAUUGACUGUGAAAUCGUgguugg      ucugaggu      ucug     ugg uuuaa gac  w
 || ||| ||||||||||||||||||||||||||||||| |||||||||||||  || ||||||||| ||||||||||||||||||||||||||||      ||||||||      ||||     ||| ||||| |||   
 cc ggc ucgaacugggagaaccuccgacuuuagugug AAGAGCCCUGUCG  UG ACUCaaaua uccauuaacugacacuuuagcaccaacc      aggcucua      agac     acu ggauu cug  w
c  u   g                               -             CA  C         y                            ----ra        -----a    --wsa   u     u   yu 


Annotation confidence Not enough data
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Genome context
MDC005862.437: 7931-8199 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR10984b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR10984b-5p

Accession MIMAT0043609
Description Malus domestica mdm-miR10984b-5p mature miRNA
Sequence 70 - GGUAAUUGACUGUGAAAUCGU - 90
Evidence experimental
Illumina [1]

Mature mdm-miR10984b-3p

Accession MIMAT0043610
Description Malus domestica mdm-miR10984b-3p mature miRNA
Sequence 209 - CUCACGUACGCUGUCCCGAGAA - 230
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812