Stem-loop mdm-MIR11011a

Accession

MI0035664

Description

Malus domestica mdm-MIR11011a precursor miRNA

Sequence

aggacuuguauauaucauugcauuuucugaaaaaguaugcauccggaacaugguguuuggauaaacuugguaagauccuucaauguaaagaauuuucaaagaaaugaaaaguucggcaaauuuuuuacaaggugaaucgcggaagcacaaaaaucaaaagaaaauuuugcuacuucuaagggauucagcuugugaaaaauagaucaaaucuuuuguugcuuugaauauuauuuacacuaaggauauuagcAAGUUCAUUCAAACACCAUGUuaaggaugcauaauuuucacaaaauacaaugauucaaguccuugacucc
((((((((.....(((((((.(((((.((((((..(((((((((..((((((((((((((((.((((((.(((.((((((...((((((.(((.(((((((.(((((((.(((.((...((((((((((((.((((((.((((((..(((((.((....))...)))))...)))))..).)))))).))))))))))))...)).))).))))))).))))))).))).))))))..)))))).))).)))))).))))))))))))))))..))))))))).)))))).))))).))))))).)))))))).......

Structure

-------        uauau       c     c      ag         gg                a      g   g      caa      g   u       a       a   c  caa            g      g --     -ca     --a  a 
       aggacuug     aucauug auuuu ugaaaa  uaugcaucc  aacaugguguuuggau aacuug uaa auccuu   uguaaa aau uucaaag aaugaaa guu gg   auuuuuuacaag ugaauc c  ggaag   caaaa   uc a
       ||||||||     ||||||| ||||| ||||||  |||||||||  |||||||||||||||| |||||| ||| ||||||   |||||| ||| ||||||| ||||||| ||| ||   |||||||||||| |||||| |  |||||   |||||   ||  
       uccugaac     uaguaac uaaaa acuuuu  auacguagg  uUGUACCACAAACUUA UUGAAc auu uaggaa   acauuu uua aaguuuc uuguuuu uaa cu   uaaaaaguguuc acuuag g  ucuuc   guuuu   ag a
ccucagu        ----u       a     c      -a         aa                C      g   a      -uc      a   u       g       c   a  aga            g      g aa     auc     aaa  a 

Annotation confidence Not enough data

Genome context

MDC010208.312: 29966-30285 [-]

Mature mdm-miR11011a

• Accession: MIMAT0043613
• Description: Malus domestica mdm-miR11011a mature miRNA
• Sequence: 251 - AAGUUCAUUCAAACACCAUGU - 271
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812